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cherrymoya.h

/***************************************************************************
                          cherrymoya.h  -  description
                             -------------------
    begin                : Sat Jan 19 2002
    copyright            : (C) 2002 by Rudiger Koch
    email                : rkoch@rkoch.org
 ***************************************************************************/

/***************************************************************************
 *                                                                         *
 *   This program is free software; you can redistribute it and/or modify  *
 *   it under the terms of the GNU General Public License as published by  *
 *   the Free Software Foundation; either version 2 of the License, or     *
 *   (at your option) any later version.                                   *
 *                                                                         *
 ***************************************************************************/

#ifndef CHERRYMOYA_H
#define CHERRYMOYA_H

using namespace std;
#include <amygdala/genomehandler.h>
#include <amygdala/neuron.h>

#include <pair.h>

class Cherrymoya : public GenomeHandler  {
public:
    Cherrymoya(unsigned int r);
    ~Cherrymoya();

//  implemented methods from base class
    virtual void gene (string gene);
    virtual void startChromosome(int geneLength, int genes);
    virtual void finish();

    virtual const int& getradius();
    Network* getNetwork();
    vector <AmIdInt> GetInputNeurons();
    vector <Neuron*> GetOutputNeurons();

private: // Private attributes
    float stepSize;

    unsigned int N_chromosome;
    unsigned int N_gene;
    int radius;
    float dendriteRadius;
    float offset;
    float axonLengthFactor;

    vector < vector < vector <pair <bool, Neuron *> > > > theCherrymoya;

    /*  The pair are < (strength of the singularity) , (reference to an associated skin neuron) >
        This reference is needed to get the location */
    vector < float* > skinSingularities;
    /*  The pair are < (strength of the singularity) , (an reference to an input neuron) >
        This reference is needed to get the location */
    vector < pair < float, Neuron*> > inputNeurons;
    /*  The pair are < (strength of the singularity) , (an reference to an output neuron) >
        This reference is needed to get the location */
    vector < pair < float, Neuron*> > outputNeurons;

    LayerConstants layerConst;
    Layer *hiddenLayer;
    Layer *inputLayer;
    Layer *outputLayer;

    unsigned int nId;

    enum cherrymoyaPart { SKIN=1, IN, OUT };
    Network *net;
    unsigned int synapses;

protected: // Private methods
    void BuildCherrymoya();
    void connectInputNeurons();
    void connectSkin();
    void connectMeat();
    void getFieldStrengthMeat(float *location, float *E);
    void getFieldStrengthSkin(float *location, float *E);
    void AxonConnector3D(Neuron *currentNeuron);
    void AxonConnectorSkin(Neuron *currentNeuron);
};

#endif

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