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genome.h

/***************************************************************************
                          genome.h  -  description
                             -------------------
    begin                : Sat Dec 8 2001
    copyright            : (C) 2001 by Rudiger Koch
    email                : rkoch@rkoch.org
 ***************************************************************************/

/***************************************************************************
 *                                                                         *
 *   This program is free software; you can redistribute it and/or modify  *
 *   it under the terms of the GNU General Public License as published by  *
 *   the Free Software Foundation; either version 2 of the License, or     *
 *   (at your option) any later version.                                   *
 *                                                                         *
 ***************************************************************************/

#ifndef GENOME_H
#define GENOME_H

using namespace std;
#include <string>
#include <vector>
#include <pair.h>

#include <amygdala/genomehandler.h>

class Genome {
public: 
    Genome();
    ~Genome();

  void get(string uri);

  void submit(int score);

  void setHandler(GenomeHandler *gh);

  void parse();

  void Format(string format);

protected: // Protected methods

  void getHttp(string URL);

  void getFile(string path);

protected: // Protected attributes

    GenomeHandler* gHandler;
    unsigned int geneId;
    string genome;
    vector <pair <int, int> > chromosomes;
    string URL;
};

#endif

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