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Genome Class Reference

#include <amygdala/genome.h>

List of all members.

Public Methods
	Genome ()
	~Genome ()
void	get (string uri)
void	submit (int score)
void	setHandler (GenomeHandler *gh)
void	parse ()
void	Format (string format)
Protected Methods
void	getHttp (string URL)
void	getFile (string path)
Protected Attributes
GenomeHandler *	gHandler
unsigned int	geneId
string	genome
vector< pair< int, int > >	chromosomes
string	URL

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Detailed Description

get a genome, either via HTTP or from a file and generate a NN from it. An object of this class needs a handler object specific to the application.

Author:

Rudiger Koch <rkoch@rkoch.org>

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Member Function Documentation

void Genome::Format (  string    format )

parses the format string as given by the server. Must be called if a gene is loaded from a file. Parameters: format  looks like: "Chromosome-format: {genes,size}{genes,size}...."

void Genome::get (  string    uri )

get a gene from specified uri. Parameters: uri  has to be in URL format, either file:/path/to/file or http://server/path In case of the http variant, the URL must point to a gene server

void Genome::getFile (  string    path )  [protected]

load a gene from a file

void Genome::getHttp (  string    URL )  [protected]

load a genome file from a http server. This server must conform to the Amygdala genome server conventions.

void Genome::parse (    )

parse the genome string. Pass all genes to the supplied GenomeHandler object

void Genome::setHandler (  GenomeHandler *    gh )

set the handler. This handler must be derived from GenomeHandler Parameters: An  instance of GenomeHandler that matches the genome

void Genome::submit (  int    score )

Submit a score to the server

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Member Data Documentation

vector<pair <int, int> > Genome::chromosomes [protected]

pair <genes, gene_size>

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The documentation for this class was generated from the following file:

• genome.h

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